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During the seventh season, Mulder eventually discovers the truth about his sister.
Samantha was abducted (either by the alien colonists or the government conspirators), and various tests were performed on her.
As of the series finale, Mulder and Scully were on the run.
Six years after the events of the ninth season, Fox Mulder's fugitive status is clear.
It is revealed that Samantha was taken by "spiritual intervention", with the help of beings called "Walk-ins". After Mulder returned home to his apartment, an application was submitted to the FBI for his reinstatement to the X-Files but this was declined by Deputy Director Alvin Kersh, who had been promoted in charge of the X-Files shortly after Mulder had been abducted.
He returned to work for a brief period of time, After about a year in hiding, Mulder obtains crucial information from a secret facility about the date of the planned alien colonization effort, but is caught and put on trial for the murder of Knowle Rohrer.
At that moment, an unidentified flying object hovers over the trio.
"If there was a profiler like himself profiling him he would have to work from the fact that he has some oral fixation because he is constantly popping sunflower seeds.
In 1982, Mulder graduated with first class honours from University of Oxford with a Bachelor of Science degree in psychology.Mulder made his first appearance in the first season pilot episode, broadcast in 1993.Mulder believes in extraterrestrial unidentified flying objects (UFOs) and a government conspiracy to hide or deny the truth of their existence.He then graduated with honors from the Quantico FBI Training Academy in 1984.Mulder investigated the X-Files by himself until March 1992, when Dana Scully, an instructor at the FBI Academy's Forensic Science Research and Training Center, was partnered with him for the purpose of applying scientific reasoning to Mulder's work and theories.